Driving Derived Environment Effects with Alignment Constraints
نویسندگان
چکیده
منابع مشابه
Sequence Alignment with Weighted Constraints
Given two sequences S1, S2 and a constrained sequence C, the longest common subsequence of S1, S2 with restriction to C is defined as the constrained longest common subsequence (CLCS) of S1, S2 and C. At the same time, the best alignment of S1, S2 with restriction to C is defined as the constrained pairwise sequence alignment (CPSA) of S1, S2 and C. Previous algorithms have shown that both CLCS...
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Alignment is among the principal constraint families found in Optimality Theoretic approaches to phonology. Much of the discussion in the recent literature (Eisner 1997; Kager 2001, 2005; McCarthy 2003; Buckley 2009), however, has focused on difficulties arising within the standard Generalized Alignment (McCarthy and Prince 1993a, 1993b) framework. In this article, I propose a definition of ali...
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15 صفحه اولMultiple sequence alignment with user-defined constraints
In many situations, automated multi-alignment programs are not able to correctly align families of nucleic acid or protein sequences. Difficult cases comprise not only distantly related sequences but also tandem duplications independent of their evolutionary age. Frequently, additional biological information is available that establishes homologies at least in parts of the sequences based on st...
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ژورنال
عنوان ژورنال: Proceedings of the Annual Meetings on Phonology
سال: 2017
ISSN: 2377-3324
DOI: 10.3765/amp.v4i0.4013